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getopts.pl file
By Jit 2402 days agoSSPACE_longread complain for getopts.pl file. To resolve this, download and have in SSPACED-Longreads folder. Cheers :)Post-doc in Genomics of Fungi
Post-doc in Genomics of Fungi Fungi are of central importance for the global carbon cycle because of their role in the degredation of complex organic matter such as plant material. Fungi also represent one of the last frontiers...
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
By Jit 2381 days ago Comments (1)github.com - KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are currently available in KAT: hist: Create an histogram of k-mer occurrences from a sequence file. Adds metadata in...Internships @ Indian Institute of Science
Internships available for Bachelors and Masters students Each node will host student interns interested in pursuing a research career in mathematical or computational biology at institutions located in its region. Eligibility: Bachelors (3rd...P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
By BioStar 2318 days agowww.fishbrowser.org - P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaffold genome fragments. The method is suitable for most genomes. The program could utilize Illumina Paired-end RNA-sequencing reads from target speciesies. Our method provides...Synima: a Synteny imaging tool for annotated genome assemblies
By Abhimanyu Singh 2264 days agogithub.com - Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included...RCB Gurgaon Bioinformatics RA/PA Openings
Advt. No.1/2014 Recruitment for Research Associate and Project Assistant positions Regional Centre for Biotechnology (RCB) is an autonomous academic institution established by the Department of Biotechnology, Govt. of India with regional and...ANItools web: a web tool for fast genome comparison within multiple bacterial strains
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By Rahul Nayak 2217 days agobitbucket.org - Some parts of a genome may have a very high degree of heterozygosity. This causes contigs for both haplotypes of that part of the genome to be assembled as separate primary contigs, rather than as a contig and an associated haplotig. This can be an...Junior Research Fellow at IARI
DIVISION OF NEMATOLOGY INDIAN AGRICULTURAL RESEARCH INSTITUTE NEW DELHI 110012 Applications are invited for the posts of one Junior Research Fellow in the DBT funded project entitled “Plant parasitic nematode genome informatics - insilico...
