BOL

Genome assembly pipeline !

bactopia.github.io - Bactopia is a flexible pipeline for complete analysis of bacterial genomes. The goal of Bactopia is process your data with a broad set of tools, so that you can get to the fun part of analyses quicker! Bactopia was inspired by Staphopia, a...

github.com - This Snakemake pipeline implements the GATK best-practices workflow for calling small genomic variants.

snakemake.readthedocs.io - This part of the documentation describes the snakemake executable. Snakemake is primarily a command-line tool, so the snakemake executable is the primary way to execute, debug, and visualize...

https://www.nextflow.io/ - Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages. Its fluent DSL simplifies the implementation and the deployment of...

www.tutorialspoint.com - Online coding group for most of the programming languages. Code in almost all popular languages using Coding Ground. Edit, compile, execute and share your projects, 100% cloud. http://www.tutorialspoint.com/codingground.htm

github.com - This is not so much an instructional manual, but rather notes, tables, and examples for Python syntax. It was created by the author as an additional resource during training, meant to be distributed as a physical notebook. Participants (who favor...

AWK is a standard tool on every POSIX-compliant UNIX system.

Covenant University (CU)­Ota:Covenant University (with her enriching and growing state­of­the­art laboratories in the area of  science and technology, arts, business and social sciences) is presently the Best University in...

ucdavis-bioinformatics-training.github.io - Our team offers custom bioinformatics services to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software. We replicate standard analysis pipelines (best practices) when...