Surabhi Chaudhary
A Bioinformatician
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Ancient whole genome duplication (WGD) detection tools !
By Rahul Nayak 1827 days agoThere are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is defined as the average number of synonymous substitutions at each synonymous site, and there is...Josefa González Lab
Lab focus on understanding how organisms adapt to their environments. They combine omics approaches with detailed molecular and phenotypic analyses to get a comprehensive picture of adaptation. Our aim at being internationally recognized as a...Refseq viraal genome sequences !
By Jit 1548 days agoftp.ncbi.nlm.nih.gov - List of all viruses on NCBI https://ftp.ncbi.nlm.nih.gov/refseq/release/viral/CrossMap: program for genome coordinates conversion between different assemblies
By Rahul Nayak 1502 days ago Comments (1)crossmap.sourceforge.net - CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supports commonly used file formats...Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome
By Jit 1321 days agowww.ncbi.nlm.nih.gov - LOCUS ON563414 197205 bp DNA linear VRL 30-MAY-2022 DEFINITION Monkeypox virus isolate MPXV_USA_2022_MA001, complete genome. ACCESSION ON563414 VERSION ON563414.3 KEYWORDS . SOURCE Monkeypox virus...bacLIFE: an automated genome mining tool for identification of lifestyle associated genes
By BioStar 723 days agogithub.com - bacLIFE is a streamlined computational workflow that annotates bacterial genomes and performs large-scale comparative genomics to predict bacterial lifestyles and to pinpoint candidate genes, denominated lifestyle-associated genes (LAGs), and...
Is reference genome necessary for gene expression study in transcriptome sequencing or for variant discovery in genome sequencing?
Rahul Agarwal 4616 days ago320000 viruses in mammals yet to sequenced in future!!!
By Rahul Agarwal 4569 days ago70 per cent of emerging viral diseases such as HIV/AIDS, West Nile, Ebola, SARS, and influenza, are zoonoses - infections of animals that cross into humans.Tools to detect synteny blocks regions among multiple genomes
By Jitendra Narayan 4555 days ago Comments (24)Collections of synteny detection tools and related materialsMedGenome is looking for Genome Analysts
MedGenome is looking for Genome Analysts (5-6 Positions), ambitious and energetic who will work both independently and as part of a collaborative team to generate data from various genomics-oriented workflows and assist in the optimization and...
