Shruti Paniwala
A Bioinformatician
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MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic...
By Jit 1411 days agogithub.com - MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs. Metaeuk combines the fast and sensitive homology search capabilities of MMseqs2 with a dynamic programming procedure to...Machine Learning for Genomics
By Jit 1172 days agogithub.com - Module 1: Statistics for genomics (2-8 August 2021) A simple intro to statistical distributions hypothesis testing linear...Machine learning training and courses in bioinformatics !
By Rahul Nayak 1790 days ago Comments (1)homes.sice.indiana.edu - Machine learning techniques have been successful in analyzing biological data because of their capabilities in handling randomness and uncertainty of data noise and in generalization. In this class, we will learn basics about probabilistic models...PASA: Gene Structure Annotation and Analysis
By biogeek 2525 days agopasapipeline.github.io - PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation...Gene Ontology Consortium
By Jit 2144 days agowww.geneontology.org - The GO knowledgebase is composed of two primary components: the Gene Ontology (GO), which provides the logical structure of the biological functions (‘terms’) and their relationships to one another, manifested as a directed...GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
By Poonam Mahapatra 2367 days agosourceforge.net - GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior...A guide to machine learning for biologists
By Abhi 1063 days agowww.nature.com - Because of the increasing size and inherent complexity of biological data, there has been an increase in the application of machine learning in biology to create useful and predictive models of the underlying biological processes. All machine...modelStudio: a package automates the explanation of machine learning predictive models
By Jit 1768 days agomodeloriented.github.io - The modelStudio package automates the explanation of machine learning predictive models. This package generates advanced interactive and animated model explanations in the form of a serverless HTML site. It...
Genome Browsers
Last updated 4118 days ago by Rahul Agarwal Comments (2)Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes, prokaryotes, etc. Following are the weblink for different available...MAKER
By Jitendra Narayan 3213 days ago Comments (1)www.yandell-lab.org - MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats,...
