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BBTools for bioinformatician !
By Surabhi Chaudhary 2502 days ago Comments (1)BBTools can do almost everything now !Porechop: tool for finding and removing adapters from Oxford Nanopore reads
By Rahul Nayak 2399 days agogithub.com - Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop...BASE: a practical de novo assembler for large genomes using long NGS reads
By Rahul Nayak 2256 days agogithub.com - new de novo assembler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE...QuasR: Quantification and annotation of short reads in R
By Neel 1227 days agowww.bioconductor.org - The QuasR package (short for Quantify and annotate short reads in R) integrates the functionality of several R packages (such as IRanges (Lawrence et al. 2013) and Rsamtools) and external software (e.g. bowtie, through the Rbowtie package, and...Tigers genome sequenced
By Rahul Agarwal 4114 days agoOnly 4.4 percent DNA difference between Tiger and house catsHeatmapper: web-enabled heat mapping for all
By Jit 2274 days agowww2.heatmapper.ca - Heatmapper is a freely available web server that allows users to interactively visualize their data in the form of heat maps through an easy-to-use graphical interface. Heatmapper is a versatile tool that allows users to easily create a wide variety...Scientists map 17,294 proteins produced in human body
By Jit 3861 days ago17,294 proteins mapped in 30 organs of human bodyNCBI Magic-BLAST
By Jit 2322 days agoncbi.github.io - Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of...ForBio and UiB course: Introduction to phylogenetic methods
By Rahul Nayak 1833 days agoThe is an introductory course that is aimed at students who will need to preform phylogenetic analyses in their work, but who have little or no experience with phylogenetic analyses.
