Our Sponsors
Related items
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
By Jit 3180 days agowww.ncbi.nlm.nih.gov - A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally undemanding. It can be combined with genomic signature and/or...GeNeCK (Gene Network Construction Kit) is a comprehensive online tool kit that integrate various...
By Rahul Nayak 2608 days agolce.biohpc.swmed.edu - GeNeCK (Gene Network Construction Kit) is a comprehensive online tool kit that integrate various statistical methods to construct gene networks based on gene expression data and optional hub gene information. It efficiently constructs gene...PyParanoid: a pipeline for rapid identification of homologous gene families in a set of genomes
By BioStar 2032 days agogithub.com - PyParanoid is a pipeline for rapid identification of homologous gene families in a set of genomes - a central task of any comparative genomics analysis. The "gold standard" for identifying homologs is to use reciprocal best hits (RBHs) which depends...Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes
By LEGE 745 days agogithub.com - Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. Our goal was to make it straightforward to work from a combination of input sources including annotated contigs in Genbank format and FASTA files...Japanese Multi Omics Reference Panel, jMorp
By Rahul Agarwal 2996 days agojmorp.megabank.tohoku.ac.jp - Japanese Multi Omics Reference Panel, jMorp, is a database of metabolome and proteome data in plasma obtained from volunteers in ToMMo. Metabolome data were measured by proton NMR and LC-MS, and proteome data were obtained by nanoLC-MS. We could...Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
By Rahul Nayak 3036 days agogithub.com - Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good...FQC Dashboard: Integrates FastQC results into a web-based, interactive, and extensible FASTQ...
By Shruti Paniwala 1943 days agogithub.com - FQC is software that facilitates quality control of FASTQ files by carrying out a QC protocol using FastQC, parsing results, and aggregating quality metrics into an interactive dashboard designed to richly summarize individual sequencing runs. The...Referee: Genome assembly quality scores
By Jit 2680 days agogwct.github.io - Modern genome sequencing technologies provide a succint measure of quality at each position in every read, however all of this information is lost in the assembly process. Referee summarizes the quality information from the reads that map to a site...Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
By Jit 1849 days agogithub.com - Ktrim is written in C++ for GNU Linux/Unix platforms. After uncompressing the source package, you can find an executable file ktrim under bin/ directory compiled using g++ v4.8.5 and linked with libz...The anatomy of successful computational biology software
By Jitendra Narayan 4531 days agoCreators of software widely used in computational biology discuss the factors that contributed to their success
