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Genomics is moving beyond the traditional approach of studying DNA using a single reference genome. Today, researchers are increasingly using pangenomes, which represent genetic information from multiple genomes and capture a much broader range of...

We study the evolutionary genomics of marine invertebrates to understand their origins and diversity. Our lab combines high-throughput sequencing and single-cell transcriptomics to explore a wide range of non-model systems. We are particularly...

biojava.org - BioJava provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of this bookmark is to provide useful links for bioinformatician. Please add more useful Java...

christophergandrud.github.io - You can also create Sankey diagrams with sankeyNetwork. Here is an example using downloaded JSON data: https://en.wikipedia.org/wiki/Sankey_diagram

fujiwara/perl-queue-q4pg-lite - simple message queue using PostgreSQL. formbuilder/formbuilder - Perl CGI::FormBuilder module for generating, validating, and processing HTML forms fastly/fastly-perl - Fastly perl...

France, as a major player in the fight against climate change and guarantor of the spirit of the Paris Agreement, is launching a new MOPGA visiting fellowship program geared towards strengthening scientific contributions to climate change issues...

github.com - HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as to a single reference genome). Based on an extension of BWT for...

pachterlab.github.io - kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for...

github.com - MFannot is a program for the annotation of mitochondrial and plastid genomes MFannot is a program for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independent tools. It makes intense...

Creators of software widely used in computational biology discuss the factors that contributed to their success