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LSC: Improving PacBio Long Read Accuracy by Short Read Alignment
By Abhimanyu Singh 2739 days agowww.healthcare.uiowa.edu - Added Command line argument support. Multi-stage execution modes. Support for parallelization. Now execution proceeds in batches of long reads the size of which can be set by --long_read_batch_size N. Better compressed intermediate files. Added...Metagenomics role in antibiotic resistance
By Rahul Agarwal 4297 days agowww.landesbioscience.com - Related latest article: http://www.nature.com/nature/journal/v509/n7502/pdf/nature13377.pdfsunbeam: A robust, extensible metagenomics pipeline
By Jit 2089 days agogithub.com - Sunbeam is a pipeline written in snakemake that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses conda to manage dependencies, so it doesn't have pre-existing dependencies or admin...Lorikeet: Strain resolver for metagenomics
By BioStar 610 days agogithub.com - Lorikeet is a within-species variant analysis pipeline for metagenomic communities that utilizes both long and short reads. Lorikeet utilizes a re-implementaion of the GATK HaplotypeCaller algorithm, performing local re-assembly of potentially...Shinyheatmap
By Jit 3425 days agohttp://shinyheatmap.com/ - Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets. Visualizing such big data has posed technical challenges in biology, both in...NCBI PSI-BLAST Tutorial
By Jitendra Narayan 4580 days agohttp:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are...Sequencing By Xpansion
By Jitendra Narayan 3916 days agoXpandomer in a single drop reaction to sequence an entire human genome 1000X over.Blobsplorer
By Jit 3554 days agonematodes.org - Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display of GC content, coverage, and taxonomic annotation for...EAGER
By Jit 3374 days agogithub.com - The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both state-of-the-art tools for each step as well as new complementary tools tailored for ancient DNA data within a single...I-PV: Interactive Protein Sequence Visualization
By Jit 3170 days agohttp://i-pv.org/ - I-PV is a interactive data visualization software designed for inspection of protein sequences and mutation information. It is mainly used for Genetics and Bioinformatics. So what exactly makes it standout? http://i-pv.org/ipv_rec
