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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
By Jit 1346 days ago Comments (1)github.com - DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools...vt: a variant tool set that discovers short variants from Next Generation Sequencing data.
By Jit 1759 days agogenome.sph.umich.edu - vt is a variant tool set that discovers short variants from Next Generation Sequencing data. https://genome.sph.umich.edu/wiki/Vt https://github.com/atks/vtThe new corona variant has 23 mutations in all, which is unusually huge !
By Shruti Paniwala 1429 days agoThe new SARS-CoV-2 version, B.1.1.7, which was first seen in the third week of September in Kent and Greater London, has since spread to other locations in the UK.PureCN: copy number calling and SNV classification using targeted short read sequencing
By Jit 2296 days agobioconductor.org - This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with...Coding Ground
By Jitendra Narayan 3538 days agowww.tutorialspoint.com - Online coding group for most of the programming languages. Code in almost all popular languages using Coding Ground. Edit, compile, execute and share your projects, 100% cloud. http://www.tutorialspoint.com/codingground.htmTiny Python3.6 Notebook
By Neel 2729 days agogithub.com - This is not so much an instructional manual, but rather notes, tables, and examples for Python syntax. It was created by the author as an additional resource during training, meant to be distributed as a physical notebook. Participants (who favor...AWK for beginners !
By BioJoker 2036 days agoAWK is a standard tool on every POSIX-compliant UNIX system.
Bioinformatics in Africa: Part5 - Nigeria
Last updated 1384 days ago by BioStarCovenant University (CU)Ota:Covenant University (with her enriching and growing stateoftheart laboratories in the area of science and technology, arts, business and social sciences) is presently the Best University in...Genome Assembly Workshop 2020
By Jit 1184 days agoucdavis-bioinformatics-training.github.io - Our team offers custom bioinformatics services to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software. We replicate standard analysis pipelines (best practices) when...Fix rewritable error of ELGG !
By Abhi 1102 days ago Comments (1)www.digitalocean.com - The mod_rewrite module uses a rule-based rewriting engine, based on a PCRE regular-expression parser, to rewrite requested URLs on the fly. By default, mod_rewrite maps a URL to a filesystem path. However, it can also be used to...
