BioStar
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piRNA and Bioinformatics: Decoding the Guardians of the Genome
By LEGE 456 days agopiRNAs are the unsung guardians of the genome, safeguarding genetic material from transposable elements and contributing to gene regulation and epigenetic programming. Bioinformatics has opened the floodgates of discovery, unraveling the...NVIDIA and Arc Institute Unveil Evo 2: A Breakthrough AI for DNA Design
By BioStar 379 days agoNVIDIA and the Arc Institute have introduced Evo 2, a groundbreaking AI model designed to understand, predict, and generate DNA sequences. This marks a major advancement in computational biology, offering scientists an unprecedented tool to decode...Pangolin tutorial !
By Abhi 1549 days agocov-lineages.org - This is a tutorial for using the Pangolin Web Application. For information on using the command line tool, please visit the command line tool usage page. https://cov-lineages.org/resources/pangolin/tutorial.htmlANGES: reconstructing ANcestral GEnomeS maps
By Abhimanyu Singh 3216 days agopaleogenomics.irmacs.sfu.ca - This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, version 1.01 (July 10, 2012, documentation updated in August 2014) Examples...AGORA: Algorithm for Gene Order Reconstruction in Ancestors
By Jit 1468 days agogithub.com - AGORA stands for “Algorithm for Gene Order Reconstruction in Ancestors” and was developed by Matthieu Muffato in the DYOGEN Laboratory at the École normale supérieure in Paris in 2008. // | | // ) ) // ) )...pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction
By LEGE 746 days agogithub.com - ausarg/pipesnake is a bioinformatics best-practice analysis pipeline for phylogenomic reconstruction starting from short-read 'second-generation' sequencing data. The pipeline is built using Nextflow, a workflow tool to run tasks across...You and your friend have similar DNA !!!
By Jit 4241 days agoYour friends may be as genetically similar to you as your fourth cousin ...DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
By Jit 1818 days ago Comments (1)github.com - DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools...vt: a variant tool set that discovers short variants from Next Generation Sequencing data.
By Jit 2231 days agogenome.sph.umich.edu - vt is a variant tool set that discovers short variants from Next Generation Sequencing data. https://genome.sph.umich.edu/wiki/Vt https://github.com/atks/vtThe new corona variant has 23 mutations in all, which is unusually huge !
By Shruti Paniwala 1901 days agoThe new SARS-CoV-2 version, B.1.1.7, which was first seen in the third week of September in Kent and Greater London, has since spread to other locations in the UK.
