Results for "Generates"
Blogs
Computer simulation of genetic mechanism !!
...ckage simulating the evolution of copy number profiles along a tree. http://bit.ly/simcopy SIMLA SIMLA is a SIMuLAtion program that generates data sets of families for use...2993 days ago
BBTools for bioinformatician !
...xact number of bases with a each coverage level. You can also get per-base coverage or binned coverage if you want to plot the coverage. It also generates median and standard deviation...2289 days ago
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Bookmarks
- ...nt detection tools:* SAMtools: Mpileup* GATK: Unified Genotyper* FreeBayesEach of these tools takes as its input a BAM file of aligned reads and generates a list of likely variants in...
3671 days ago
PhyloGrapher - Graph Visualization Tool
...sualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set...2969 days ago
- +28 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...etermined bases which has been proven to correlate with poor quality and multiple copy reads. It also enables to clean paired-ends sff files and generates on one side a sff with the va...2704 days ago
Awesome perl frameworks, libraries and software - PART 3
...user friendly way, preventing users from raw editing of configuration files. mackers/passook - Passook is a perl script that automatically generates passwords. Passook is customi...2513 days ago
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Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...imCopy An R package simulating the evolution of copy number profiles along a tree. http://bit.ly/simcopySIMLA SIMLA is a SIMuLAtion program that generates data sets of families for use...3755 days ago
List of In-silico Binding Site Prediction Tools
...s that share local structural similarities with the query protein and generates structure-based alignments of...www.biochem.ucl.ac.uk/~roman/surfnet/surfnet.html The SURFNET program generates surfaces and void regions bet...3762 days ago
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ResearchLabs posts
- Dr. Jarvis’ laboratory studies the neurobiology of vocal communication. We want to know how the brain generates, perceives, and learns behavior. We use vocal communication as a model b...
3719 days ago
Bio-Scripts
Perl script to Mutate a DNA Sequence
#!/usr/local/bin/perl -w # This script randomly mutates the DNA sequence and generates 10 successive mutation results. # While executing this script it asks for the file name of th...2934 days ago
Generating a random string with Perl
#!/usr/bin/perl # This function generates random strings of a given length sub generate_random_string { my $length_of_randomstring=shift;# the length of # the random strin...2926 days ago
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Comments
- ...hs, and insert sizes. The ART is open-source and available for free download. wgsim: wgsim is another widely used short read simulator that generates synthetic reads based on the...
434 days ago
Comment on "Sibelia: A comparative genomics tool"
...in SAM format in the file "blocks_sequences.sam". "d3" visualization ------------------ File name = "d3_blocks_diagram.html". "Sibelia" generates an interactive html diagram t...1303 days ago
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