3466 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of dat...computational and analysis work, most of the reviewer also prefers the open source based res...3749 days ago
List of bioinformatics workflow management tools !
Here are list of Workflow Managers BigDataScript – A cross-system scrip...nbsp;] Galaxy – a popular open-source, web-based platform...p;| web ] SeqWare – Hadoop Oozie-based wor...1184 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3991 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evalu...tools used for bench-marking. We further demonstrate that while existing tools are based on...1188 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical...thus far the development of reliable knowledge –based potentia...of alpha helices in membrane-spanning proteins. It is based on...3986 days ago
Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of micro...e genome. In this report, we compare and evaluate several genome assembly software based on...1961 days ago
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages....3993 days ago
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy imp...st Biol. 2006 Oct;55(5):756-68.Dutheil J, Pupko T, Jean-Marie A, Galtier N. A model-based app...3989 days ago
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Bioinformatics: Introduction to PERL
This course is aimed at those new to programming and provides an introduction to programmi...written by others. The course will be taught using the online Learning Perl materials created by Sofia Robb of the...3992 days ago
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The Centre for Bioinformatics, Biomarker Discovery and Information-Based Medicine (CIBM)
The Centre for Bioinformatics, Biomarker Discovery and Information-Based Medicine (CIBM) is committed to shortening the process of obtaining novel discoveries to achieve distinctively bett...3989 days ago
3989 days ago
Spotlight on Genomics: Understanding Our Genes - A Step to Personalized Medicine
(Visit: http://www.uctv.tv/) Learn about the essential role of genomics in the development of stem cell based the...3946 days ago
IBM Research Computational Biology Center
The IBM Computational Biology Center embraces activities at Yorktown Heights, with strong...isciplinary field with important applications in biology, chemical physics, materials science, agriculture, chemist...3943 days ago
Extracting FASTA sequences based on position with perl script !!
#!/usr/bin/env perl #Uses: perl sub-seq.pl input.txt range use strict; use warnings; my $end = pop; my $start = pop; local $/ = '>'; while () {...2663 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usag...RSION = "1.00"; =head1 NAME psl_scaffolder.pl - use self-mapped PSL file to scaff...query sequences "prefix" => "psl_scaffold_", #...for (my $i = 0; $i {"prefix"}, $nextScaffoldI...2350 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotec...through an integrated approach, and to develop an early diagnosis and scanning kit based on...2403 days ago
Web prgramming for biologist/bioinformatician
PHP is quite popular these days (in combination with mySQL (query and design db), CSS (for styling...ttps://www.youtube.com/user/phpacademy http://cs75.tv/2012/summer/ Bioinformatics based Php...3677 days ago