Comment on "Benchmarking Perl Module !"
...module, which provides a simple and standardized way to measure and compare the p...the form of a subroutine that runs the code you want to benchmark. Here's an exa...chmark module provides a simple and standardized way to measure and compare the p...459 days ago
Comment on "Short-read assembly using Spades !"
...quencing reads. SPAdes (St. Petersburg genome assembler) is a popular software tool for short-read assembl...unning SPAdes is usually as follows: spades.py -o output_directory -1 forward_reads.fastq -2 reverse_read...459 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...all things into your conda-directory. When you install packages via cpan it will also print the folder perl is installing the package into. If you want to be extra-sure, you can a...460 days ago
Comment on "Short-read assembly using Spades !"
...erview of how to use SPAdes for short-read assembly: Install SPAdes: SPAdes can be downloaded from the official website (http://cab.spbu.ru/software/spades/). It is available f...465 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...genome synteny analysis: Choose the species: Select the species that you want to compare based on their e...e annotation: Annotate the genes in each genome using gene prediction software or tools such as MAKER. Id...467 days ago
Comment on "Download desire version of Blast software !"
Latest blast software and old versions https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/986 days ago
Comment on "Coronavirus Resources !"
Illumina toolkit for SARS-CoV2 https://sapac.illumina.com/informatics/biological-interpretation/coronavirus-software.html#about1005 days ago
1145 days ago
Comment on "List of non-commercial NGS genotype-calling software"
...ariant and indel caller for mapped sequencing data. [ paper-2015 ]gridss – GRIDSS: the Genomic Rearrangement IDentification Software Suite. [ paper-2017&nb...1186 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...tics) conda config --add channels conda-forge # Install cpanm conda install perl-app-cpanminus # packagename is the name of the Perl package you want cpanm packagename1226 days ago