Protocol for De novo Genome Assembly using Illumina Reads
...w.sanger.ac.uk/resources/software/artemis/IGV - http://www.broadinstitute.org/igv/ Automated and semi automated annotation tools:Prokka - https://github.com/tseemann/prokkaRAST - htt...1256 days ago
Ancient whole genome duplication (WGD) detection tools !
...e" and found the following: GenoDup: https:// github.com/MaoYafei/GenoDup-Pipeline.../peerj.com/articles/6303/WGDdetector: https:// github.com/yongzhiyang2 012/WGDdetec...tallation is much simpler git clone https://github.com/arzwa/wgd.gitcd wgdpip in...1207 days ago
Innovative blog and portfolio website!
...o website in under an hour! Here is the list of useful pages to mativate you https://brittanychiang.com/ https://ashutosh1919.github.io/#/ https://dalinhuang99.github.io/ http://www.rleonardi.com...1100 days ago
996 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignmen...929 days ago
Finding a mimicry game for teaching on-line and mentioned general resources
...b.2020.0014) Other one, a bit less friendly: https://ccl.northwestern.edu/netlogo/models/Mimicry Camouflage practical https://alexis-catherine.github.io/publication/natural-select...729 days ago
Useful link to teach evolution !
...b.2020.0014) Other one, a bit less friendly: https://ccl.northwestern.edu/netlogo/models/Mimicry Camouflage practical https://alexis-catherine.github.io/publication/natural-select...630 days ago
Tools for Sequence translation !
BOrf - https://github.com/betsig/borf CodAn - https://github.com/pedronachtigall/CodAn EMBOSS-Sixp...- http://hmmer.org/, https://github.com/EddyRivasLab/easel GeneM...web server) PLASS - https://github.com/soedinglab/plass Prodiga...596 days ago
596 days ago
Tools for Differential expression analysis
...ioc/html/apeglm.html ashr - https://github.com/stephens999/ashr, ht...limma - https://kasperdanielhansen.github.io/genbioconductor/html/limma...eb/packages/MetaCycle/index.html, https://github.com/gangwug/MetaCycle RUVSeq...596 days ago