Introduction to Bioinformatics
Introduction to bioinformatics is a course for biologists and clinicians that would like to learn more about the way bioinformatics is used in healthcare, biotech an...1838 days ago
List of perl special symbols !
There are some variables which have a predefined and special meaning in Perl. They are the variables that...l Symbols – File handlers $@ Perl error string $! Error number...t https://www.tutorialspoint.com/perl/perl_special_variables.htm1601 days ago
New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to AutoKeras, an open source software library for automated machine learning. See README&nbs...1542 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics- cheminformatics resource combining detailed drug data with comprehen...1476 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code...ch line, followed by tab perl -pe 's/(.*)/string\t$1/'...e any uppercase letters. perl -ne 'print unless m/[A-Z...nless it contains a number perl">perl -lane 'print $F...1423 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http:/...1386 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling evaluation for improved consensus accuracy (Arang Rhie)● PanGenie – algorithm that...1034 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-sized genomes. What is de novo genome assembly?The method of taking a large...1246 days ago
Common Bioinformatics Interview Questions !
The possibility of an interview for a bioinformatics position in the life sciences may be very disquieting, but the same concerns emerge time and again in my experienc...1240 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for exam...ax: qx/command/; It's a Perl operator (perlop) that execut...it can be easily converted to Perl script: For further informat...679 days ago