Introduction to Bioinformatics
Introduction to bioinformatics is a course for biologists and clinicians that would like t...ic research. The course covers many of the topics transformed by the emergence of big data and...1836 days ago
1588 days ago
New Machine Learning Packages in R
Machine Learning autokeras v1.0.1: Implements an interface to&nbs...e outcomes based on revised stacking algori...matrix objects representing textual data. It includes implementations of th...0.0: Implements multi-Study Learning algorithms such as Merging, Study-Speci...1540 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics...ource combining detailed drug data with comprehensive drug targe...Drug-Target Network: network data of 890 drugs and 394 target h...Thomson Investigational drugs databa...kr/~parkkw/Lnet/ TDR Targets Database:...1474 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be executed instea...rCase.txt > textwithoutuppercase.txt; Print only the second column of the data when...1421 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 billion by 2025.&nb...ices tools, pipelines and workflows, compute resources, data a...provides a variety of services such as oligo synthesis, database...1299 days ago
Bioinformatics tools for telomere to telomere assembly !
...)● PanGenie – algorithm that leverages a pangeno...om raw, short-read sequencing data to genotype a wide spectrum o...riptome Annotation by Modular Algorithms) – software designed f...low-complexity gene amplicon data; performs allele calling while det...1032 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-...an lead to treatments for infectious diseases. Raw NGS dataRe...ou have and what the standard is like. If required, raw data clea...1244 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J...tical evaluation of genome assemblies and assembly algori...mmomatic: A flexible trimmer for Illumina Sequence Data. Bolger, A. M., Lohse, M. & Us...1087 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mo...974 days ago