Tools to detect synteny blocks regions among multiple genomes
...ge. The left of a 'SyntenyView' page displays a diagram of chromosomes with blocks of conserved synteny. The right of a page shows homology matches between individual genes with...2640 days ago
BBTools for bioinformatician !
...n, insertion, or deletion (X, I, D). Exact matches when mapping small reads (e.g...se the following flags to report only perfect matches. Code: ambig=all vslow pe...can use "hdist" and "edist" flags to allow mismatches, or get a complete list of fl...2300 days ago
Basic command-line to run BLAST
..., press the q key. Parameters of interest include the -evalue (Default is 10?!?) and the -outfmt Lets filter for more statistically significant matches with a different output forma...2274 days ago
Install ImageMagick from Unix Source
...=======================================================================ImageMagick is configured as follows. Please verify that this configurationmatches your expectations. Host syst...2175 days ago
2163 days ago
List of motif discovery tools !
...volution selection. ScanProsite Search for motifs and patterns within protein sequences. ScanProsite -- detection of PROSITE signature matches and ProRule-associated functi...2023 days ago
1865 days ago
Common steps for reads mapping !
...ng reads, the reference genome needs to be indexed. This involves creating an index of the genome sequence that allows the mapper to quickly find matches to the reads. Most mappers ha...453 days ago