Perlbrew: admin-free perl installation management tool.
...sudo cpan App::perlbrew perlbrew init If it is installed with cpan, the perlbrew executable should be installed as /usr/bin/perlbrew or /usr/local/bin/perlbrew. For all users who w...2533 days ago
1427 days ago
G-compass: a comparative genome browser
G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualizes evolutionarily conserved genomic regions between human and other 12...2259 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Courses Old courses (2012-2014) Metagenomics Workshop 2...2254 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where ad...2084 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al. (1990) and significantly improved by Altschul et al. (1997). It is a...2017 days ago
MFannot : a program for the annotation of mitochondrial and plastid genomes
...es intense use of RNA/intron detection tools including HMMER, Exonerate, Erpin and others. http://megasun.bch.umontreal.ca/cgi-bin/mfannot/mfannotInterface.pl1758 days ago
RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler
RePS (Repeat-masked Phrap with scaffolding), a WGS sequence assembler, that explicitly identifies exact kmer repeats from the shotgun data and removes them prior to t...1627 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
...osition then use filtering method to generate good quality SNPs. https://arxiv.org/abs/1809.06700 https://github.com/redayounsi/2KP2P /2kp2omp/bin/main_2kp2_K63_C2 -i fastq_fil...1603 days ago
RefKA: A fast and efficient long-read genome assembly approach for large and complex genomes
RefKA, a reference-based approach for long read genome assembly. This approach relies on breaking up a closely related reference genome into bins, aligning k-mers unique to each bin with PacBio reads, and then assembling each bin in parallel followed by a final bin-stitching step.1509 days ago