RopeBWT2: Incremental construction of FM-index for DNA sequences
RopeBWT2 is an tool for constructing the FM-index for a collection of DNA sequences. It works by incrementally inserting one or multiple sequences into an existing pseudo-...2060 days ago
1978 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...ool is on practicality and therefore has the following features: Good performance. On a MacBook Pro using Arabidopsis data, pseudochromosome construction takes less than a minute and...1885 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...ool is on practicality and therefore has the following features: Good performance. On a MacBook Pro using Arabidopsis data, pseudochromosome construction takes less than a minute and...1693 days ago
Mercator: Multiple Whole-Genome Orthology Map Construction
Whole-genome homology maps attempt to identify the evolutionary relationships between and within multiple genomes. The term "syntenic" is often used to describe regions of...1487 days ago
wgd—simple command line tools for the analysis of ancient whole-genome duplications
wgd is a easy to use command-line tool for KS distribution construction named wgd. The wgd suite provides commonly used KS and colinearity analysis workflows together...1423 days ago
pggb: the pangenome graph builder
This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). Its goal is to build a graph that is locally dire...1370 days ago
JumboDB: tool for de Bruijn graph construction
jumboDB tool for fast de Bruijn graph construction from long sequences (reads or genomes) with very low error rate. JumboDB is not a genome assembler by itself but rather a subroutine th...1032 days ago
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set uni...717 days ago
MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
...ccard coefficient directly from raw sequencing reads and enables the construction of phylogenetic trees based o...oidy levels, proving itself as a powerful tool for phylogenetic tree construction.68 days ago