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ALPACA: A hybrid strategy for assembly of genomic DNA shotgun sequencing reads.
ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set. Detail paper at https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3927-82215 days ago
- It groups containers that make up an application into logical units for easy management and discovery. Kubernetes builds upon 15 years of experience of running production workloads at Google, combined with best-of-breed ideas and practices from the community.
1554 days ago
transrate: Understanding your transcriptome assembly
Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assembly in detail and compares it to experimental evidence such as the sequencin...2141 days ago
Genome Annotation using MAKER tutorial !
...f effort to wrap my head completely around everything. Here I will describe a de novo genome annotation for Boa constrictor in detail, so that there is a record an...1981 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
...robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools. kallisto is described in detail in: Nicolas L Bray, Harold P...1963 days ago
- gene_info recalculated daily--------------------------------------------------------------------------- tab-delimited one line per GeneID Column header line is the firs...
1959 days ago
- Trelliscope provides a way to flexibly visualize large, complex data in great detail from within the R statistical programming environment. Trelliscope is a component in the Delt...
1584 days ago
shinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
...go to the Single-genome plot menu. To cretae two-genome plot for comparison of data across two genomes, go to the Two-genome plot menu. For the detail format of input data, check t...1545 days ago
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