RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.1013 days ago
989 days ago
RNA-seq workflow: gene-level exploratory analysis and differential expression
Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor packages. We will start from the FASTQ files, show how these were quantified to the r...967 days ago
963 days ago
VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs
VCF2PopTree is a client-side software written in Javascript and it runs purely within the user’s computer/br...lays the tree in a mobile phone (iPhone and Android) if the input file size is small.&...890 days ago
ChIPBase: open database for studying the transcription factor binding sites and motifs
ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNA...886 days ago
odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well...local partial order and, when sorted, the deltas be small. This allows them to be compr...iable length integer representation, resulting in a small i...851 days ago
850 days ago
821 days ago
doubletrouble: identify duplicated genes from whole-genome protein sequences and classify
doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classify them based on the...sification scheme, duplicates can also be classified into SD- and SSD-derived (small-s...89 days ago