QuartataWeb: user-friendly server developed for polypharmacological and chemogenomics analyses.
Data on protein-drug and protein-chemical interactions are rapidly accumulating in databases such as Dru...ls, or polypharmacological treatments. https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformati...1513 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
Dahak is a software suite that integrates state-of-the-art open source tools for metagenomic analyses. Tools in the daha...llation, and execution problems typically associated with other open-source bioinformati...1505 days ago
PPAI: a web server for predicting protein-aptamer interactions
PPAI can query aptamers and proteins, predict aptamers and predict protein-aptamer interactions in batch mode precisely and efficiently, which would be a novel bioinformatics tool for the research of protein-aptamer interactions. PPAI web-server is freely available at http://39.96.85.9/PPAI1441 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more. 5/20/2019: V...1450 days ago
PhiSpy: PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes
PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes. Given an annotated...Sajia Akhter (sajia@stanford.edu) Edwards Bioinformatics Lab Improvements, bug fixes,...anges were made by Katelyn McNair Edwards Bioinformati...1423 days ago
wgd—simple command line tools for the analysis of ancient whole-genome duplications
wgd is a easy to use command-line tool for KS distribution construction named wgd. The wgd suite provides comm...e to genomics researchers in a convenient manner. https://academic.oup.com/bioinformati...1400 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
SHAMAN is a shiny application for differential analysis of metagenomic data (1...23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for ta..., boxplot, heatmap, …).The bioinformatics treatment is based on Vsearch...e. More at https://bmcbioinformati...1375 days ago
1304 days ago
Applied Computational Genomics Course at UU: Spring 2020
This course will provide a comprehensive introduction to fundamental concepts and experimental approaches in the analysis and interpretation of experimental genomics data. It will be structur...1247 days ago
1243 days ago