Glia: a Graph/Smith-Waterman (partial order) aligner/realigner
glia's main use is as a local realigner. It will realign reads to a set of known (or putative) variants in a VCF, both consuming and producing an ordered stream of BAM...1611 days ago
Nucleus: Python and C++ code for reading and writing genomics data.
Nucleus is a library of Python and C++ code designed to make it easy to read, write and analyze data in common genomics file formats like SAM and VCF. In addition, Nucleus...1606 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Rcorrector has an accuracy higher than or comparable to existing methods, including the only other method (SEECER) designed for RNA-seq reads, and is more time and memo...1603 days ago
1597 days ago
Leaflet: JavaScript libraries for interactive maps
Leaflet is one of the most popular open-source JavaScript libraries for interactive maps. Features Interactive panning/zooming Compose maps using arbitrary co...1598 days ago
jtools : more efficient presentation of regression analyses
This package consists of a series of functions created by the author (Jacob) to automate otherwise tedious research tasks. At this juncture, the...1596 days ago
Juicebox: Visualization and analysis software for Hi-C data
Juicebox is visualization software for Hi-C data. This distribution includes the source code for Juicebox, Juicer Tools, and Assembly Tools. Download Juicebox here, or use Juice...1587 days ago
1579 days ago
shinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
shinyChromosome is a graphical user interface for interactive creation of non-circular whole genome diagrams devel...n, and https://yimingyu.shinyapps.io/shinyChromosome for online use. The source code a...1579 days ago
DeepHiC: A Generative Adversarial Network for Enhancing Hi-C Data Resolution
...enhancing Hi-C data resolution. We developed this server for helping researchers to enhance their own low...licks. Ab initio training could be performed according to our published code. We provided trained models for...1576 days ago