Wtdbg2: a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore
Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error cor...2083 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
...0 projects, and is being used in clinical sequencing trials in the Mainstreaming Cancer Genetics programme. Tutorial https://github.com/andyrimmer/Platypus/blob/...2077 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
...ns quickly on a command line to generate informative and publication quality figures. Synima is open source and freely available from https://github.com/rhysf/Synima under t...2072 days ago
Referee: Genome assembly quality scores
...a quality score for every position in a genome assembly. This allows for easy filtering of low quality sites for any downstream analysis. https://github.com/gwct/referee2067 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
...same input when assembled multiple times with the same or different compute resources. Source code for SKESA is freely available at https://github.com/ncbi/SKESA/releases. Res...2057 days ago
Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
...Sequencing (2nd edition) conference in the source folder: https://github.com/swarris/Pacasus/blob/mast.../173872 It uses the pyPaSWAS framework for sequence alignment (https://github.com/swarris/pyPaSWAS)2059 days ago
Deepbinner: a signal-level demultiplexer for Oxford Nanopore reads
Deepbinner is a tool for demultiplexing barcoded Oxford Nanopore sequencing reads. It does this with a deep convolutional neural network classifier,...2044 days ago
visNetwork: an R package for network visualization, using vis.js javascript library
...R package for network visualization, using vis.js javascript library (http://visjs.org/). All remarks and bugs are welcome on github : https://github.com/datastorm-open/visNetwork...2001 days ago
PilonGrid: parallel wrapper around the Pilon framework
The distribution is a parallel wrapper around the Pilon framework The pipeline is composed of bash scripts, an example mapping.fofn which shows how to input your fastq files (you give paths to the R1 file), and how to launch the pipeline.2028 days ago
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