Understanding your reads and mapping !
One of the best tutorial for beginners ... https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html1615 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
Rcorrector has an accuracy higher than or comparable to existing methods, including th...0.95) -ek INT: expected number of kmers; does not affect the correctness of program but affects the memory usage...1608 days ago
shinyCircos: an R/Shiny application for interactive creation of Circos plot
shinyCircos, a graphical user interface for interactive creation of Circos plot. shinyCircos c...stalled either on computers for personal use or on local or public servers to provide online...1606 days ago
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BlobToolKit: A toolkit for genome assembly QC
Filtering raw genomic datasets is essential to avoid chimeric assemblies and to increa...ets even for highly fragmented assemblies. BlobTools2 is a command-line program to convert assemblies and ana...1592 days ago
shinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
shinyChromosome is a graphical user interface for interactive creation of non-circular whole g...ttp://shinyChromosome.ncpgr.cn, and https://yimingyu.shinyapps.io/shinyChromosome for online...1584 days ago
DeepHiC: A Generative Adversarial Network for Enhancing Hi-C Data Resolution
DeepHiC is a GAN-based model for enhancing Hi-C data resolution. We developed this server...esolution data by a few steps of clicks. Ab initio training could be performed according...with those of the downsampled Hi-C data we used in trainin...1581 days ago
Phytozome v12.1: plant science community hub for accessing palnts genomic data
Phytozome, the Plant Comparative Genomics portal of the Department of Energy's Joint G...enomes have been sequenced, assembled and/or annotated with JGI Plant Science program resources. By integrating thi...1567 days ago
chromosight: Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python package to detect chromatin loops (and other patterns) in Hi-C contact maps. Stable version with pip: pip3 install --user chromosight Stable version with...1561 days ago