SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files
...Q files, supporting gzipped input files. Includes functions to interleave and de-interleave FASTQ files, to rename sequences and to count and pr...840 days ago
837 days ago
Tiara: deep learning-based classification system for eukaryotic sequences
With a large number of metagenomic datasets becoming available, eukaryotic metagenomics emerged as a new challenge. The proper classification of eukaryotic nuclear and organellar genomes is an essential step toward a better understanding of eukaryotic diversity.826 days ago
PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index
...y tradeoffs made by different alignment tools and provides a promising foundation on which to test new alignment ideas over large collections of sequences.789 days ago
651 days ago
Collection of Graph Visualization tools !
Standard approaches to genome inference and analysis relate sequences to a single linear reference genome. This is efficient but has a fundamental problem: Differences from this refere...510 days ago
Metabuli 분리 improves metagenomic read classification
...agenomic classifier that jointly analyze both DNA and amino acid (AA) sequences. DNA-based classifiers can ma...higher sensitivity in detecting homology between query and reference sequences, leverageing higher conservat...380 days ago
Creating Genetic Maps from GBS data
Genetic map, as the name suggest is simply knowing the relative positions of specific sequences across the genome. There are various methods to generate them, but most popular method i...284 days ago
138 days ago
doubletrouble: identify duplicated genes from whole-genome protein sequences and classify
doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classify them based on their modes of duplication. The duplication modes are i. segmental duplic...105 days ago