1158 days ago
Calling variants in non-diploid systems
...tforms) and true low frequency variants. Some of the early attempts to do this well have been accomplished on human mitochondrial DNA although the same approaches will wor...1098 days ago
QuasR: Quantification and annotation of short reads in R
...ality of several R packages (such as IRanges (Lawrence et al. 2013) and Rsamtools) and external software (e.g. bowtie, through the Rbowtie package, and HISAT2, through the Rhisat2 package). The pa...1051 days ago
Kmer: a suite of tools for DNA sequence analysis
...cies). Sim4db: Spliced alignment of cDNA and genomic sequences, from the same (sim4) or related (sim4cc) species. Optimized for high-throughput batched alignment....1046 days ago
k-mers tutorial - classification and taxonomy
...ng and searching k-mer-based sketch search databases for all the things. But I haven't spent too much talking about using k-mers for taxonomy, although that has become an ahem...1037 days ago
1023 days ago
1017 days ago
OGDRAW - Draw Organelle Genome Maps
...theless, you can upload most database entries. Please take a look at our FAQ section and do not hesitate to report bugs or suggestions for improvements by&n...998 days ago
997 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source GPL-licensed software impl...997 days ago