2158 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
...eCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without...2156 days ago
NanoPack: visualizing and processing long-read sequencing data
...d are available as a graphical user interface, a web service at http://nanoplot.bioinf.be and command line tools. https://academic.oup.com/bioinformatics/article/34...2154 days ago
2150 days ago
CBS Comparative Microbial Genomics group - BioTools download page
he CMG-biotools system presents a stand-alone interface for comparative microbial genomics. The package is a customized operating system, based on Xubuntu 10.10, av...2142 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...ation, and the multiTF program for detecting evolutionarily conserved transcription factor binding sites in multiple alignments. In addition, Mulan supports two-way communication wi...2141 days ago
LSC: Improving PacBio Long Read Accuracy by Short Read Alignment
Added Command line argument support. Multi-stage execution modes. Support for parallelization. Now execution proceeds in batches of...compressed intermediate files. Added utilities folder. Added support for multiple short read f...2128 days ago
STRUM: structure-based prediction of protein stability changes upon single-point mutation
STRUM is a method for predicting the fold stability change (ΔΔG) of protein molecules upon single-point nsSNP mutations. STRUM adopts a gradient boosting regression appr...2124 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...ressed as a series of genomic positions. It's main features are: Import of mapped data from mapped data (BAM/SAM/bowtie etc) Creation of data groups for visualisation and analys...2123 days ago
Qualimap2: Evaluating next generation sequencing alignment data
...ace (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. Supported types of experiments in...2123 days ago