MinION_GC: An R script to do some QC on MinION data
Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intensive. The benefit of this approach is that it works on a single...2401 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a database...2400 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro su...itu Hi-C, DNase Hi-C, Micro-C, capture-C, capture Hi-C or HiChip data. &...2399 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is spec...accurate alignment tool, ACANA is particularly useful in comparative sequence analysis for identifying conserved fun...2398 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools for quickly ana...n, and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive vis...2396 days ago
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SVfinder: Tool for detecting genomic rearrangement form DNA-seq data
SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.2390 days ago
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NanoSim: nanopore sequence read simulator based on statistical characterization.
...le read simulator that captures the technology-specific features of ONT data and allows for adjustments up...s read characterization, which provides a comprehensive alignment-based analysis and generates a set of read p...2386 days ago