odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of algorithms that...edges and path steps are recorded as deltas between the current node id and the targ...882 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bio...nometools” which consists of several modules. If you are interested in gene prediction, have a look at&nb...882 days ago
Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the su...859 days ago
AGORA: Algorithm for Gene Order Reconstruction in Ancestors
AGORA stands for “Algorithm for Gene Order Reconstruction in Ancestors” and.../ // | | // | | AGORA is used to generate ancestral genomes for the Genomicus online server for gene order comparison, and has bee...855 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables us...along evolutionary time. Once a query gene has been entered, it is displ...the ancestral species within the phylogenetic range of interest. All th...xtant species 200 Number of extant genes 4303993 Number o...855 days ago
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GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
The GenomeQC web application is implemented in R/Shiny version 1.5.9 and Python 3.6 and is freely available at https://genomeqc.maizegdb.org/ under the GPL l...776 days ago
CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation
CrowdGO is a protein Gene Ontology predictor using a meta approach, analyzing the predictions of other tools in order to get an improved precision and recall. Please note that...769 days ago
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