A guide to machine learning for biologists
Because of the increasing size and inherent complexity of biological data, there has been an increase in the appl...e learning techniques, including the most recently created and frequently used deep neura...918 days ago
896 days ago
Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum o...859 days ago
Tiara: deep learning-based classification system for eukaryotic sequences
With a large number of metagenomic datasets becoming available, eukaryotic metagenomics emerged as a new challenge. The proper classification of eukaryotic nuclear and organellar genomes is an essential step toward a better understanding of eukaryotic diversity.841 days ago
Ten quick tips for deep learning in biology
By taking a comprehensive and careful approach to deep learning based on critical thinking about research questions, planning to maintain rigor, and discerning how work might have...830 days ago
786 days ago
Quip: Aggressive compression of FASTQ, SAM and BAM files.
This will help us to reduce the amount of drive space we take up and decrease data transfer times Quip compresses next-generation sequencing data with extreme prejudice....771 days ago
Choosing the Right NGS Sequencing Instrument for Your Study
The right sequencing instrument for your study depends on your project goal. Se...truments available. If you’re new to high-throughput sequencing and have questions about how you should design your sequencing run, fill out our free c...749 days ago
HairSplitter: assembling long reads in an unknown number of haplotypes
Pros and cons of HairSplitter Limitations of HairSplitt...ypes and distinguish repeated elements Only needs sequencing reads, potentially error-pron...ypes and distinguish repeated elements Only needs sequencing reads, potentially error-pron...574 days ago
478 days ago