Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the sequencing noise (abundant in all NGS pl...1104 days ago
QuasR: Quantification and annotation of short reads in R
The QuasR package (short for Quantify and annotate short reads in R) integrates the fun...whole analysis workflow of typical high throughput sequenci...-processing and alignment, up to quantification. A single R script can contain all steps of...1056 days ago
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UniqueKmer: Generate unique KMERs for every contig in a FASTA file
Generate unique k-mers for every contig in a FASTA file. Unique k-mer is consisted of...hich is an ultra-fast tool to identify and visualize microbial sequences from sequencing data. https://github.com/Ope...930 days ago
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odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a h...stantial. In partially ordered regions of the graph, most deltas will require only a single byt...883 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single bin...883 days ago