Ensembl Variation - Calculated variant consequences
For each variant that is mapped to the reference genome, we identify all overlapping Ensembl trans...ele of the variant may have on each transcript. The set of consequence terms, defined by the Sequence Ontology (SO), that can...2136 days ago
STRUM: structure-based prediction of protein stability changes upon single-point mutation
STRUM is a method for predicting the fold stability chang...es on a variety of features at different levels of sequence and structure properties. The...que characteristics of STRUM is the combination of sequence profiles with low-resolution...2136 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...ualisation and analysis of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be u...pped regions against an annotated genome. Flexible quantitation of the...on of reports containing data and genome annotation...2135 days ago
Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Int...ves like feature counts. Supported types of experiments include: Whole-genome s...2135 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evolved over time...thus funannotate is aimed at simplifying the genome s...2127 days ago
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MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2 enables the convenient usage of available genomic resources, sup...2118 days ago
2118 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in Evi...anscripts that one or other transcript assembler may produce. It is the "right sequence" you want, and now the only w...2115 days ago