FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
FMLRC, or FM-index Long Read Corrector, is a tool for performing hybrid correction of l...ijn graph based implementations, FMLRC is not restricted to a particular k-mer size and instead uses a two pass m...2122 days ago
SimLoRD: A read simulator for third generation sequencing reads
SimLoRD is a read simulator for third generation sequencing reads and is currently focused on the Pacific Biosciences...(RNA), or using a fixed length Quality values and number of passes depend on frag...2110 days ago
LSC: Improving PacBio Long Read Accuracy by Short Read Alignment
Added Command line argument support. Multi-stage execution modes. Suppor...arallelization. Now execution proceeds in batches of long reads the size of which can be set by --long_read_batch_size N. Better compressed interme...2095 days ago
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Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologue...a pipeline for their use. Synima has a range of graphical parameters including size, colours, order, and labels,...2041 days ago
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BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et a....0 default = 10.0 default = 10.0 default = 10.0 default = 10.0 Word size:the size of the initial word that must...2000 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome assemblies (up to mammalian-size). QUAST-LG is included...1989 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporting...on of molecules, generation of tautomers, molecule fragmentation, calculation of various...and similarity searches. Our products support also frag...1960 days ago