A guide to machine learning for biologists
Because of the increasing size and inherent complexity of biological data, there has been an increase in the application of machine learning in biology to create useful and predict...903 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
Gaussian Network Model (GNM) is a powerful tool to sample co...be assessed in a more rigorous physics ground (the size and number of the orthogonal...be more efficient (saving 3/4 time, assuming equal size of system and environment), m...883 days ago
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Quip: Aggressive compression of FASTQ, SAM and BAM files.
This will help us to reduce the amount of drive space we take up and decrease data tran...nbsp;formats, compressing large datasets to as little as 15% of their original size.756 days ago
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ALE: Assembly Likelihood Estimator
Just import the assembly, bam and ALE scores. You can convert the .ale file to a set of .wig files with ale2wiggle.py and IGV can read those directly. Depending on your genome size you may want to convert the .wig files to the BigWig format.468 days ago
Metabuli 분리 improves metagenomic read classification
Metabuli 분리 improves metagenomic read classification through metamers, DNA-AA k-mers, t...agenomic samples. In addition, it can classify reads against a database of any size as long as it fits in the har...380 days ago
bacLIFE: an automated genome mining tool for identification of lifestyle associated genes
bacLIFE is a streamlined computational workflow that annotates bacterial genomes and performs large-scale comparative genomics to predict bacterial lifestyles and to p...95 days ago
ULTRA (ULTRA Locates Tandemly Repetitive Areas) : Effective Labeling of Repetitive Genomic Sequence
ULTRA is a tool to find and annotate tandem repeats inside genomic sequence. It is able...le to find very large repeats in highly repetitive sequence, regardless of the size of sequence or length of repe...9 days ago