List of gene ontology software and tools
...rity-based scatterplots, interactive graphs, or tag clouds. http://revigo.irb.hr/ QuickGo (EMBL-EBI Institute) It uses extensive computational filters to allow the generation of sp...3762 days ago
pbalign: maps PacBio reads to reference sequences and saves alignments to a BAM file
pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Com...2225 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...iltering k-mer hashes and FastQ/A files: kmer: Produces a k-mer hash containing only k-mers within specified coverage and GC tolerances. seq: Filters a sequence file based on whet...2034 days ago
Awesome perl frameworks, libraries and software - PART 2
...i/libtext-tepl-runtime-perl - Text::Tepl::Runtime - Basic runtime filters for Text::Tepl theory/pod-si...mcnamara/pod-simple-wiki - A Perl Module for creating Pod to Wiki filters. jimdigriz/freeradius-oauth2...2546 days ago
Commercial and public next-gen-seq (NGS) software
...The first pass identifies putative binding sites and compensates for variation in the mappability of sequences across the genome. The second pass filters out sites that are not signif...3571 days ago
Software packages for next gen sequence analysis
...The first pass identifies putative binding sites and compensates for variation in the mappability of sequences across the genome. The second pass filters out sites that are not signif...3294 days ago
Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016
...customize pipelines and share them with other Strand NGS users. Finally, we will show a brief glimpse of an elaborate pipeline that aligns reads, filters poor-quality matches, compute...3064 days ago
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FiNGS: Filters for Next Generation Sequencing
Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their thresholds) Option to use filters identical to I...Tags: Filters, Next, Generation, Sequencing, FiNGS, NGS
1215 days ago
Comment on "Sibelia: A comparative genomics tool"
...by the results (poor coverage, for example), try to set simplification parameters manually (see section "Fine tuning"). By default, Sibelia filters out synteny blocks shorter th...1337 days ago
1572 days ago