Results for "Frequency"
Blogs
Dynamic chromosome breakpoints !!!
...ldquo;chromosomal breakpoints” refers to these places where they break. Mostly, this process occurs with a high degree of accuracy at high frequency in both eukaryotic and prokar...3580 days ago
Computer simulation of genetic mechanism !!
...loid populations. http://www.ebi.ac.uk/projects/bargen FIGG FIGG is a genome simulation tool that uses known or theorized variation frequency, per a given fragment size an...3003 days ago
Bookmarks
- ...samples -- for your own algorithms or for visualization; or interactively process entire cohorts to find transition/transversion ratios, allelic frequency, genome-wide association and...
3516 days ago
- ...interactively. Compare entire cohorts in seconds with SQL-like queries. Compute transition/transversion ratios, genome-wide association, allelic frequency and more. Process big ge...
3453 days ago
- +13 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...p;(Viral Spectrum Assembling) implements a novel viral assembling and frequency estimation methods. This soft...sembling based on maximum-bandwidth paths in weighted read graphs and frequency estimation via Expectation Ma...2713 days ago
Awesome perl frameworks, libraries and software - PART 3
...mple tower defense game in Perl clintongormley/ElasticSearchX-Autocomplete - ElasticSearchX::Autocomplete is a Perl module which gives you frequency (and optionally geolocation)-...2522 days ago
Top-level pages
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...dels, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The CG island is a stretch of DNA (usually longer than 200 bases) in which the frequency of the CG sequence is higher...3852 days ago
Apps for Busy Bioinformatics Researchers !!!
...oss of heterozygosity (LOH) events Quickly find variants of interest by filtering variants based on associated genes, functional impact, allele frequency in data sets, and cross-refer...3569 days ago
- +3 more Top-level pages
Wire posts
News
Conserved Domain Database (CDD) version 3.11 released
...Updates to the Conserved Domain Database include: Position-specific score matrices (PSSMs) have been recomputed for many models in CDD, and frequency tables have been added to the...3755 days ago
- ...trating application of these UMI-based features in Strand NGS for low frequency variant calling in cfDNA samp...ed. UMI-tagged NGS libraries allow, ultra-sensitive detection of low frequency variants from liquid biopsy s...
2399 days ago
ResearchLabs posts
- ...pecies? What forces drive some species to acquire global dosage compensation of the X, while others only compensate specific genes? What are the frequency and molecular dynamics of sex...
851 days ago
Bio-Scripts
Count the frequency of base G in a given DNA sequence
#!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos my $countG = 0; my $currentPos = 0; #calculate the len...2944 days ago
Calculate Dinucleotide Frequency with Perl
#!/usr/bin/perl -w use strict; my ($genome, $head, $tail); my (%mono_nt, %di_nt); $/ = ">"; open my $fasta, '2366 days ago
- +3 more Bio-Scripts
Tags
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though tetra-nucleotide analysis (TNA) utilizes the informat...
Tags: Bioinformatics, Tetra-Nucleotide, Analysis, Frequency, DNA, Phylogeny, Algorithms
2586 days ago
- d2Tools are the toolbox for counting the frequency of K-tuple from sequencing datasets and then calculating the pairwise dissimilarity matrix between samples with the d2-style(d2/d2*/d2S representing d2/d2Star/d2shepp, respectively) measures. Hao, Dai, Eucliean, Mahattan, and Chebyshev ...
Tags: d2Tools, toolbox, count, frequency, k-tuple, sequencing, calculate, dissimilarity
2082 days ago
- +1 more Tags
Comments
Comment on "Calling variants in non-diploid systems"
...erial or viral) genomes, but we do not know exactly how many. Thus we will use the --pooled-continuous option of FreeBayes to generate frequency-based variant calls as well a...1071 days ago
Comment on "Nanopolis: polish a genome assembly"
....results -P 8 \ nanopolish variants --consensus -o polished.{1}.vcf -w {1} -r reads.fa -b reads.sorted.bam -g draft.fa -t 4 --min-candidate-frequency 0.1 nanopolish vcf2fasta -g...2127 days ago
- +1 more Comments
