Next Generation Sequencing (NGS) Tutorials
...ad cleaning, mapping and SNP calling using Next Generation Sequence 10.1186/1471-2164-12-285 A framework for variation discovery and genotyping using next-generation DNA seq...3541 days ago
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FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads
FastGT is a program package for whole-genome genotyping of genome variants directly from raw sequencing reads. It is written in C and runs in Linux. FastGT uses a list of variant-specif...1613 days ago
MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants
MALVA is able to genotype multi-allelic SNPs and indels without mapping reads MALVA calls correctly more indels than the most widely adopted genotyping pipelines Mapping-free approach...1613 days ago
1613 days ago
Best Practices for Variant Calling with the GATK
...F Video 03/19/15 Introduction to variant discovery: calling cohorts Louis Bergelson PDF Video 03/19/15 Variant calling and joint genotyping Sheila Chandran PDF Video...1588 days ago
Breedbase is a comprehensive breeding management and analysis software
...anagement and analysis software. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping samples in a field, store lar...1269 days ago
1016 days ago
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
Merfin, a k-mer based variant-filtering algorithm for improved accuracy in genotyping and genome assembly polishing. Merfin evaluates each variant based on the expected k-mer...817 days ago