Results for "aligner"

Blogs

Bookmarks

  • LASTZ

    LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful...

    2982 days ago

  • Spines

    ...for high-sensitivity, genome-wide synteny; Papaya, an all-purpose alignment tool for less diverged sequences; and SLAP, a context-sensitive local aligner for diverged sequences with l...

    3051 days ago

  • +17 more Bookmarks

Top-level pages

Wire posts

News

Bio-Scripts

Tags

  • minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences

    git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequences against a reference genome ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam # create an index first and then map ./minimap2 -d MT-human.mmi test/MT-human.fa ./minimap2 -a MT-human.mmi test/MT...

    Tags: minimap2, versatile, pairwise, aligner, genomic, spliced, nucleotide, sequences

    2189 days ago

  • Glia: a Graph/Smith-Waterman (partial order) aligner/realigner

    glia's main use is as a local realigner. It will realign reads to a set of known (or putative) variants in a VCF, both consuming and producing an ordered stream of BAM alignments.  More at https://github.com/ekg/glia glia -f ~/human_g1k_v37.fasta -t 20:62900077-62902077 -v variants.vc...

    Tags: Glia, Graph, Smith-Waterman, partial, order, aligner, realigner

    1602 days ago

  • +1 more Tags

Comments