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Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relatively slow and c...2911 days ago
Genome Assembly Tools and Software - PART2 !!
...ds fully automated metagenomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or functional annotations. T...2728 days ago
Awesome perl frameworks, libraries and software - PART 4
...ins kristofg/rifec - Receive Images From Eye-Fi Cards kirei/fpdns - Net::DNS::Fingerprint gjospin/PhyloSift - Phylogenetic and taxonomic analysis for genomes and meta...2536 days ago
Phylogenetic for Bioinformatics
...t another source of information becoming available for systematic and taxonomic appraisal. This particular kind of data has become so popular that taxonomical schemes based solely on mol...3988 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...kov chain models (using k-words) R package http://www-rcf.usc.edu/~fsun/Programs/NGS-MC/NGS-MC.html Species identification/taxonomic profiling CLARK Taxonomic classification of metagenomic...2413 days ago
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Installing Covid19 Environment !
...to manually update the taxonomy databases before Krona can generate taxonomic reports. The update script is ktUpdateTaxonomy.sh. The default location for storing taxonomic databases is /home/vikas/anac...966 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with compositional classifications from a Naive Bayes classifier, RITA is able to achieve very high accuracy on short reads. Unlike o...Tags: Rapid, identification, high-confidence, taxonomic, assignments, metagenomic, data, RITA
2393 days ago
Tags: GTDB-Tk, toolkit, assign, objective, taxonomic, classifications, bacterial, archaeal, genomes
2126 days ago
Comment on "Kraken: ultrafast metagenomic sequence classification using exact alignments"
Useful links https://genomics.sschmeier.com/ngs-taxonomic-investigation/index.html832 days ago