Tools to detect synteny blocks regions among multiple genomes
...plete genome annotations. Sibelia (http://arxiv.org/abs/1307.7941). A comparative genomic tool: It assists biologists in analysing the genomic variations that correlate with pathogens...2664 days ago
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Next Generation Sequencing (NGS) Tutorials
...org/content/19/R2/R227.full.pdf ============================================== NGS data analysis pipelines Detecting and annotating genetic variations using the HugeSeq pipeline&nb...3541 days ago
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Evaluation of genome assembly software based on long reads
...new insights into evolution and sequence diversity. They have also been applied to resequencing analyses, to create detailed maps of structural variations in many species. Also, these...1973 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...a web service that allows searching deep sequencing datasets with a reference sequence of a gene of interest] Detecting and annotating genetic variations using the HugeSeq pipeline. L...3833 days ago
Apps for Busy Bioinformatics Researchers !!!
...ng data that have been published for research and learning purposes. Visualize whole human genome sequencing data including small variations, copy number variations (CNVs), and loss of heterozyg...3595 days ago
You and your friend have similar DNA !!!
...rth cousin. Scientists with a long-running Framingham Heart Study looked at 1,932 people (examination of about 1.5 million markers of genetic variations), comparing unrelated friends...3623 days ago
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Visiting Scientist - Computational Genomics (two positions)
...A and RNA data Data mining and development of pipelines and troubleshooting Genome diversity analysis such as SNPs, Indels, Structural Variations, population structure Ge...3643 days ago
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Tags: ClipCrop, tool, detecting, structural, variations, single-base, resolution, soft-clipping, information
2093 days ago
Tags: ClipCrop, tool, detect, structural, variations, single-base, resolution, soft-clipping, information
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Comment on "Sibelia: A comparative genomics tool"
...correction --------------------- Algorithm of "Sibelia" depends on presence of solid k-mers within syntenic regions. If such regions contain variations close to their borders, they...1338 days ago
Comment on "Computer simulation of genetic mechanism !!"
Thanks for such a useful list of tool for simulation studies. I guess you forgot to add RSVSim: an R/Bioconductor package for the simulation of structural variations ( https://www.bioconductor.org/packages/release/bioc/html/RSVSim.html ) in the list.3027 days ago