Comment on "Short-read assembly using Spades !"
...ort-read assembly using SPAdes: Quality control of raw reads: Before running the assembly, it is important to ensure that the raw reads are of high quality and do not contain se...458 days ago
Comment on "Coronavirus Resources !"
...developed a Variant Classification scheme that defines three classes of SARS-CoV-2 variants: Variant of Interest Variant of Concern Variant of High Consequence Intersting...1004 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny program makes it possible to speed up the computations by over two times in comparison with SatsumaSynteny2, another popular tool. Such high efficiency was attained by imp...1454 days ago
Comment on "Nextflow: Data-driven computational pipelines"
A collection of high quality Nextflow pipelines https://github.com/nf-core/1579 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
Benchmark (or "High-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple technologies to generate vari...1602 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
NAR: Genomics and Bioinformatics publishes high quality research into genomics and bioinformatics, including novel computational or experimental methods and novel biological findings related to genomics, proteomics, transcriptomics, and epigenetics. https://academic.oup.com/nargab1902 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1993 days ago
2180 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...graphmap align -h []GraphMap - A very accurate and sensitive long-read, high error-rate sequence mapperGra...ferent shapes) will be used (2x memory-hungry but more powerful for very high error rates). [false] --min-b...2335 days ago
2562 days ago