2968 days ago
2764 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...l data and applications (default version)python-biopython-sql - Biopython support for the BioSQL database schemalibbtlib-perl - library for basic sequence manipulation # sudo apt-get...3993 days ago
Five points for bioinformatics software/tools
...of data and try to make sense of it, biologically. But, most of the newbie bioinformaticians are faced with dilemma when they receive biological sequence data for the first time. They...3750 days ago
Download mutliple fasta file from NCBI in one GO!!
...se three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that y...(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' GIs.txt >sequence.fasta where GIs.txt contains...3953 days ago
Next Generation Sequencing (NGS) Tutorials
...data analysis DOI: 10.1093/bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence 10.1186/1471-2164-...3530 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3911 days ago
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Bio++ : C Language libraries for your biological need
...f C++ libraries for Bioinformatics, including sequence analysis,phylogenetics, molec...ique features of the libraries are as follows:Sequence analysis Sequence and Site o...theil J, Boussau B. Non-homogeneous models of sequence evolution in the Bio++ suite...3990 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides...3990 days ago
3990 days ago
3989 days ago
100K Foodborne Pathogen Genome Project
...hnologies, today announced that it has added 20 newly completed genome sequences of foodborne disease-causing...al Center for Biotechnology Information. 100K Genome Project, aims to sequence the genomes of 100,000 bacter...3966 days ago
Prime Minister’s 100k Genome Project
Genomics Ebgland is destined to sequence 100,000 patients over the next five year in England. A landmark project by british government. Genomics England will play a key role in...3966 days ago
Structural polymorphism analysis from NGS data
...a flagship project aiming at understanding and improving the adaptive capacity of agroecosystems it will be critical to establish a link between sequence variation, functional variati...3991 days ago
Bioinformatics PhD studentship available in New Zealand
...ir influences on different phenotypes and disease states of a cell. Recent shifts towards large-scale analyses of transcriptional regulation on a sequence and epigenetic level are at t...3991 days ago
3991 days ago
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...rately predict links, such as specific molecular interactions, in eukaryotic cell signaling systems using comprehensive genomics data like genome sequence and transcript profiles. We a...3991 days ago
Bioinformatician become producer/director !!!
...dock karega. Alignment to hona hi tha. Mera sequence mera base. Markov aapke hai.... MOTIF mil gaya. BLASTana FASTAna. Hamari Sequence aapke pass hai. BLAST To Hon...iya Hai GeneScan Karke Dekho Alignment Apna Sequence Parayi *Warning: It contai...3961 days ago
3951 days ago
Bioinformatics -- Understanding of living systems through information science
..., aiming to decode all human DNA sequences, has highlighted a research...been read using next-generation sequencers, and analyzed by computers....an organism evolves, its genome sequence changes through sudden mutati...ibara Lab uses a next-generation sequencer at Keio University, along wi...3960 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org...1144 days ago
BioPerl to convert between sequence formats from Fasta to Genbank
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO->newFh('-file' =...2959 days ago
3963 days ago
Single molecule Sequencing (SMS)
...quencing world, more and more scientists now keen to use SMS method to sequence molecules in comparatively le...be flood the market soon and may be one day it replaces 2nd generation sequencer. This group is meant to sha...3270 days ago
Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome assembler) is a po...458 days ago
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an important step in...lows users to translate a DNA sequence into its corresponding protei...the many tools available for sequence translation. The choice of to...463 days ago