3973 days ago
Computer simulation of genetic mechanism !!
...mulator of Rare Varaints (srv) is a simulator for the simulation of the introduction and evolution of (rare) genetic variants. http://simupop.sourceforge.net/cookbook/simurarevariants SUP SLINK/FastSL...3003 days ago
RNA Sequencing Helps Identify Functional Variants from GWAS
For Alzheimer’s and other complex disorders, mining the genome for disease-associated variants is no longer the obstacle. The challenge nowadays is figuring out how the identifie...3844 days ago
3681 days ago
2825 days ago
Genome Assembly Tools and Software - PART2 !!
...0 – Detection and Assembly of Insertion VariantsMindTheGap is a software...forms detection and assembly of DNA insertion variants in NGS read datasets with res...oftware uses a simple error correction, viral variants assembling based on maximum-b...2714 days ago
List of bioinformatics open source projects/software.
...-seq. GeneTalk http://www.gene-talk.de/ Tool for filtering sequence variants in VCF files. Network for sci...ertise and knowledge exchange. Database of annotations aboute sequence variants with clinically relevant info...3785 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...mulator of Rare Varaints (srv) is a simulator for the simulation of the introduction and evolution of (rare) genetic variants. http://simupop.sourceforge.net/cookbook/simurarevariantsSUP SLINK/FastSLINK utility pr...3765 days ago
3574 days ago
3653 days ago
Structural polymorphism analysis from NGS data
...rotein expression and phenotypic adaptation. The successful candidate will be in charge of the detection of polymorphisms including structural variants, of the comparison of multipl...3977 days ago
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3901 days ago
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...n which it has developed. These technologies identify the millions of variants present in normal individuals...oped approaches to efficiently and accurately computationally identify variants. More recently, the analyti...3899 days ago
2103 days ago
Samtools commands for bioinformatician !
...files samtools index sal_sej_sorted.bam.bam ### identifying genome variants (mpileup command) # -g : out...calling snp and indels # -c : find snp # -v : output only potential variants bcftools view -c -v sal_vars...1631 days ago
3981 days ago
Comment on "Coronavirus Resources !"
...Variant Classification scheme that defines three classes of SARS-CoV-2 variants: Variant of Interest Vari...rsting piece of information https://www.cdc.gov/coronavirus/2019-ncov/variants/variant-info.html989 days ago
Comment on "Calling variants in non-diploid systems"
FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in pooled samples where the n...1072 days ago