Five points for bioinformatics software/tools
...orked doc/postdoc!) so you are responsible for troubleshooting your own errors most of the time. We com..., in which you deal GB/TB of data are having maximum chances of getting errors, so please be careful and alw...3736 days ago
3968 days ago
REAPR: a universal tool for genome assembly evaluation
...f a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an assembly for manual ins...2979 days ago
2960 days ago
Genome Assembly Tools and Software - PART2 !!
...closing gaps, correcting sequence errors and transferring annotation....nce genome, correcting sequencing errors by locally clustering reads i...allows for the rapid discovery of errors and comparisons between simil...; Correct Substitution Sequencing Errors in WGS Data Sets Quake ...2714 days ago
Awesome perl frameworks, libraries and software - PART 2
...dealinging with C++) messages which can contain lot of template-related errors or warnings difficult to sort...simple - Perl module to make running system commands and capturing errors as simple as possible. PerlG...2523 days ago
3976 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...y-aware detection and correction of sequencing errors. Kelley et al, Genome Biol 11...2010. PubMedCentral Correction of sequencing errors in a mixed set of reads. Salm...t evidence of editing or are simply sequencing errors - the authors stand by their...3808 days ago
Update Genome Workbench 2.7.15 released
...oolbar buttons Phylogenetic Tree Builder Tool: improved diagnostics of errors Multiple Alignment View: opt...table of genomes (load Genome) PDF export: fixed issue with XREF table errors Tree View: fixed issues with...3749 days ago
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Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
...count_of_A = 0; $count_of_C = 0; $count_of_G = 0; $count_of_T = 0; $errors = 0; foreach $base (@DNA...else { print "Error - Unknown base: $base\n"; ++$errors; } } print "Adenine =...2944 days ago
2128 days ago
Comment on "Short-read assembly using Spades !"
...control of raw reads: Before running the assembly, it is important to ensure that the raw reads are of high quality and do not contain sequencing errors or low-quality bases. This st...444 days ago
444 days ago