List of gene ontology software and tools
...redundant GO terms. The remaining terms can be visualized in semantic similarity-based scatterplots, interacti...lab GOssTo GOssTo and GOssToWeb are tools to calculate the semantic similarity between genes or terms in the...3752 days ago
New Machine Learning Packages in R
...ng, Study-Specific Ensembling (Trained-on-Observed-Studies Ensemble), the Study Strap, and the Covariate-Matched Study Strap. and offers over 20 similarity measures. See Kishida, e...1543 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text form...TERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses seeds to detect potential similarity regions, and then tries to ex...2968 days ago
2917 days ago
Bio++ : C Language libraries for your biological need
...me, polarity and charge + physico-chemical distance (Miyata and Grantham) + import from any AAIndex entry.Consensus sequences.Pairwise alignment.Similarity score computation.Sequence bo...3990 days ago
3990 days ago
Useful Links for Bioinformaticians
...lossary The Gene-School Glossary Glossary of Genetic Terms Similarity Search Tutorials An Overvi...ormation Visualization of Multivariate Data from Biological Sequence Similarity Searches Feel free to add...3173 days ago
Complete genome sequence of Wuhan seafood market pneumonia virus is out !
...enome sequences from affected individuals are very very close to each other. Several are identical and none has more than 5 differences (99.983% similarity). This strongly suggests that...1599 days ago
3928 days ago
Blast result parser with Perl and Bioperl
...the hit sequence in the alignment print OUT $hsp->start('hit') . "\t" . $hsp->end('hit') . "\t"; # get the similarity value printf OUT "%.1f"...2957 days ago
Comment on "Basic command-line to run BLAST"
...e database. It then expands the matches to identify longer regions of similarity, called "alignments," and calculates a score for each alignment that reflects its degree of similarity. BLAST is widely used in bio...463 days ago
2165 days ago