Results for "variation"
Blogs
Dynamic chromosome breakpoints !!!
...segments of maternal and paternal chromosomes to form hybrid chromosomes have some evolutionary importance and considered as a driver of genetic variation. Moreover, the chromosome bre...3596 days ago
Computer simulation of genetic mechanism !!
...large diploid populations. http://www.ebi.ac.uk/projects/bargen FIGG FIGG is a genome simulation tool that uses known or theorized variation frequency, per a given fragme...3018 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
...==== NGS data analysis pipelines Detecting and annotating genetic variations using the HugeSeq pipeline&n...eration Sequence 10.1186/1471-2164-12-285 A framework for variation discovery and genotyping usin...3530 days ago
Junk part of the human genome unlocked
...s researchers originally had believed " Simple Quantitative PCR Approach to Reveal Naturally Occurring and Mutation-Induced Repetitive Sequence Variation on the Drosophila Y Chromosom...3539 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...ising the three primary parameter options (K, -exp_cov, -cov_cutoff) for the Velvet de novo sequence assembler. Assemblet 0.1 – Antigenic Variation AssemblerAssemblet is a...2729 days ago
Awesome perl frameworks, libraries and software - PART 2
...tyle. Farow/hexchat-scripts - Perl scripts for HexChat exercism/xperl5 - Exercism Exercises in Perl 5 Ensembl/ensembl-variation - The Ensembl Variation Perl API and SQL schema eiro...2537 days ago
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Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...nce sequence of a gene of interest] Detecting and annotating genetic variations using the HugeSeq pipeline....t al, Genome Res 20(9):1297-303, 2010. PubMedCentral A framework for variation discovery and genotyping usin...3823 days ago
Commercial and public next-gen-seq (NGS) software
...Linux/Alpha. SOCS - Aligns SOLiD data. SOCS is built on an iterative variation of the Rabin-Karp string sear...; and easy visualization of putative single nucleotide and structural variation. From the Sanger Centre. MapV...3562 days ago
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Wire posts
News
- Key finding: rs1426654 SNP of SLC24A5 gene is decider of skin pigmentation variation in South Asia rs1426654-A allele is widely spread throughout the Indian subcontinent ...
3870 days ago
- ...for scientists and institutions focused on the discovery of genotypic variation to enable a deeper understand...high-coverage sequencing, delivering a comprehensive catalog of human variation within and outside coding reg...
3805 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...iming at understanding and improving the adaptive capacity of agroecosystems it will be critical to establish a link between sequence variation, functional variation, gene/protein expression and...3992 days ago
- ...coli, will be exploited to better understand two complex genetic traits: ethanol and high temperature tolerance. For both organisms both natural variation and the outcomes of experimen...
3992 days ago
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ResearchLabs posts
- ...t of understanding in human disease. Research Area: Analysis of Next Generation sequence data in cancer Methods for analysis of structural variation in cancer genomes Next Gener...
3991 days ago
- ...dical knowledge. We are particularly interested in understanding how the response to chemical exposure is modulated by genetic and physiological variation among individuals and how thi...
3991 days ago
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Video
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...ely computationally identify variants. More recently, the analytic approaches have been extended to systematically identify insertion/deletion variation, translocations, and rearrang...3914 days ago
Bio-Scripts
- ...(BETA Tool) (Internal) Extracts evidence of structural variations from reads FindBreakpoi...of genomic regions that may harbor structural variants StructuralVariationDiscoveryPipelineSpark (BET...
2118 days ago
Pack a perl program with their dependencies on Ubuntu !
...) Link to working demo:... Jit@jit.aber SvABA: Structural variation and indel detection by local assemblyBy Jit 6 days ago SvABAStructuralvariationindeldetectionlocalassembly...1554 days ago
Groups
BioInformatics National Certification (BINC)
...an universities, Government and private institutions are involved in imparting courses in Bioinformatics in India. However, there exists a large variation in the course contents, train...3966 days ago
Comments
- ...ed reads and mapped unique reads, rRNA reads, transcript-annotated reads, strand specificity), coverage (like mean coverage, mean coefficient of variation, 5’/3’ coverage,...
2180 days ago
Comment on "Structural variation: the hidden genomic treasure"
PhD thesis and useful material on Structure Variation http://paduaresearch.cab.unipd.it/4930/1/tesi_dottorato_versione_finale.pdf2746 days ago
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