Results for "Multiple Sequence Alignment Algorithms"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl mod...- Biopython support for the BioSQL database schemalibbtlib-perl - library for basic sequence m...3974 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amounts of...of the newbie bioinformaticians are faced with dilemma when they receive biological sequence d...3731 days ago
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Bookmarks
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days...teresting where they are covering the common algorithm...cs: assembling genomes, comparing DNA and protein sequences, predicting genes, finding reg...
3969 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found...1170 days ago
- +458 more Bookmarks
Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour which is recognized as a complex...apped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment...3813 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3892 days ago
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Discussion topics
- The key to finding a solution is to notice that most genomicsequences differ by very little. It ma...the number of complete genome sequences being stored is increasing r...ww.i-programmer.info/news/181-algorithms/4537-a-new-dna-sequence-search-compressive-genomics.htm...
3944 days ago
Pages
Bio++ : C Language libraries for your biological need
....Consensus sequences.Pairwise alignment.Similarity score computation....ewick files, with support for multiple entries. Phylogenetic reconstu...ives computation.Optimization algorithms: Golden section search, Brent...B. Non-homogeneous models of sequence evolution in the Bio++ suite of...3971 days ago
- Ruby was created by Yukihiro Matsumoto, who wished to create a new language that balanced func...to. It was influenced primarily by Perl, Smalltalk, Eiffel, and Lisp. Ruby supports multiple p...
3971 days ago
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Top-level pages
- ...d, including primary sequence alignment, protein 3D structure alignment, phylogenetic tree construct...hen using a multiple sequence alignment, secondary structure can be pr...The SWISS–PROT protein sequence database and its supplement TrE...
3971 days ago
- Data mining, the extraction of hidden predict...ctations.This page Covering theory, algorithms, and methodologies, as well a...email as legitimate or spam. Common algorithms include decision tree learnin...ic machine learning and data mining algorithms. For detail visit: http:...
3970 days ago
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Wire posts
News
100K Foodborne Pathogen Genome Project
The 100K Genome Project, led by the University of California, Davis, the U.S. Food and Drug A...announced that it has added 20 newly completed genome sequences...otechnology Information. 100K Genome Project, aims to sequence t...3947 days ago
Prime Minister’s 100k Genome Project
Genomics Ebgland is destined to sequence 100,000 patients over the next five year in England. A landmark project by british government. Genomics England will play a...3947 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories...ystems it will be critical to establish a link between sequence...ms including structural variants, of the comparison of multiple a...3972 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented knowledge o...ies are being developed with the capacity to systematically measure the behaviour of multiple c...
3972 days ago
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ResearchLabs posts
- The group develops algorithms for a diverse set of problems in computational molecular biology. They are particularly interested in predicting specificity in protein interactions...
3972 days ago
- The human genome project and similar projects in disease-causing organisms such as Plasmodium...sease. Research Area: Analysis of Next Generation sequence...Computational comparative genomics Sensitive genomic sequence s...
3972 days ago
- +29 more ResearchLabs posts
Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names.... Har Ligand jo dock karega. Alignment to hona hi tha. Mera sequence mera base. Markov aapke hai...ya. BLASTana FASTAna. Hamari Sequence aapke pass hai. BLAST To Hona...iya Hai GeneScan Karke Dekho Alignment Apna Sequence P...3942 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3932 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Dat...will require not only faster computers; it will require smarter algorithms. We show how ideas from cutting-edge algorithms, including spectral graph the...3926 days ago
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Bio-Scripts
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -qu...| efetch -format fasta > seq2.fa #fastANI for alignment free comparision #conda inst...seq2.fa --visualize -o fastani.out #Plot using sequences...1125 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #...1125 days ago
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Groups
Our research interest falls in the broad field of bioi...relevant to human health. We collaborate with multiple...ibbs sampling for motif finding Biclustering algorithms Genome Assembly Developement of new algorithms to speed up the assembly proc...3967 days ago
Ruby is a dynamic, reflective, general-purpose object-oriented programming language that combines syntax inspir...is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment,...3944 days ago
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