Comment on "Short-read assembly using Spades !"
...is the process of constructing a genome sequence from a large number...ing reads. SPAdes (St. Petersburg genome assembler) is a popular softw...the directory where the assembled genome will be saved, "forward_reads...ess and accuracy of the assembled genome by comparing it to reference...554 days ago
554 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It c...named contigs.fasta. You can view the contigs using a text editor or a genome browser. SPAdes also provi...559 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the compa...ps to follow for conducting a genome synteny analysis: Choose the...logical interest. Obtain the genome sequences: Download the genom...orthologous genes between the genomes using tools such as OrthoFin...unctional analysis. Overall, genome synteny analysis is a complex...562 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
...d as the average number of reads that covers each base of the reference genome. Estimating the sequenci...C = LN / G C is the sequencing coverage G is the length of the genome L is the read length N is t...722 days ago
Comment on "Genome assembly training tutorial at Galaxy !"
Understandinng genome assembly processes https://academic.oup.com/bfg/article/15/1/1/17418421091 days ago
Comment on "Estimate Genome Size with Jellyfish and R"
Jellyfish manual at http://www.genome.umd.edu/docs/JellyfishUserGuide.pdf1120 days ago
1240 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...14) Epigenetics (4.780 :: 5.081) Frontiers in Genetics G3-Genes Genomes Genetics (3.198 :: 3.50...p;(2.138 :: 2.185) Genes (3.242) Genetics (5.963 :: 5.241) Genome (1.424 :: 1.669) Genome...1243 days ago
1285 days ago