1878 days ago
Perl one-liner for beginners !
...s//\n/' all.sent.classOnly > all.sent.classOnly.sep Replace all occurrences of pattern1 (...delete every character that is not a letter, white space or line end (replace with nothing) perl -pne&...1423 days ago
2600 days ago
3908 days ago
Genome Assembly Tools and Software - PART2 !!
...e AssemblyD is a software which performed the local and remote genome assembly by several assemblers based on an XML Template which can replace the large command lines requi...2728 days ago
Awesome perl frameworks, libraries and software - PART 4
...h can load FLEX dynamiclly punchdrunker/iOSEmoji - information about unicode6 emoji used in iOS5 openresty/replace-filter-nginx-module - Streaming regular expression replacement in response bodies djabb...2536 days ago
Most Commonly used Awk by Bioinformatician
...y with Perl, awk is simpler in many practical cases. Why awk? You can replace a pipeline of 'stuff | grep |...calculate the sum of column 2 and 3 and put it at the end of a row or replace the first column: awk '{prin...3954 days ago
2756 days ago
Find and replace ambiguous characters in fasta file with Perl and Bioperl
...DERR $s->id(), "\t$ambig\n"; if (defined($opt_m)) { $thisSeq = ReplaceAmbiguousChar($thisSeq, $opt_m...[ATGC-]//g; $string =~ s/\s+//g; return $string; } sub ReplaceAmbiguousChar { my ($stri...2956 days ago
2951 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...will also print the folder perl is installing the package into. If you want to be extra-sure, you can also install most Perl packages via conda. Replace the ':' by '-', lower-case ev...458 days ago
Comment on "Short-read assembly using Spades !"
...input data is stored. Then, enter the following command: spades.py -1 <read1.fastq> -2 <read2.fastq> -o <output_dir> Replace read1.fastq and read2.fastq w...463 days ago